PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0326419.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 126aa    MW: 14140 Da    PI: 4.9472
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0326419.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB156.44.7e-49297297
            NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     ++qdr+lPianv+rimk+ lP  akisk+ k+++qecv+ef+sfvt+easdkc++e+rkt+ngdd++wal++lGf++y++++  yl kyr++e++k
  Lj0g3v0326419.1  2 EDQDRLLPIANVGRIMKQNLPPSAKISKEGKQMMQECVTEFVSFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYADAVGRYLLKYRQAERDK 97
                     69*******************************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-45298IPR009072Histone-fold
SuperFamilySSF471131.71E-354103IPR009072Histone-fold
PfamPF008084.4E-25771IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.1E-173553No hitNo description
PRINTSPR006155.1E-175472No hitNo description
PRINTSPR006155.1E-177391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEDQDRLLPI ANVGRIMKQN LPPSAKISKE GKQMMQECVT EFVSFVTGEA SDKCHKENRK  60
TVNGDDICWA LSSLGFDNYA DAVGRYLLKY RQAERDKIIM NQNQQILLAP LGCTEKDENS  120
PANESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-42192192Transcription factor HapC (Eurofung)
4g92_B9e-42192192Transcription factor HapC (Eurofung)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359141e-83AC235914.2 Glycine max clone GM_WBc0225O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511823.12e-63PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040276e-55NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0L9VIY15e-63A0A0L9VIY1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQC75e-63A0A0S3SQC7_PHAAN; Uncharacterized protein
STRINGGLYMA10G29440.25e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-56nuclear factor Y, subunit B4